- Scenes where Penny, Judy and Maureen encounter a giant alien life-form on the planet they crash-land on was cut from the film but appear in some of the additional footage included in the DVD release. This footage includes:
- After escaping the planet, "Older Blawp" appears on the ship again after "baby blawp" hops onto Penny's shoulders. The older alien was removed in the final cut.
- More dialogue between John and Don before they get attacked by "future robot".
- The inside of the "time bubble" was originally sunny and orange, but was changed to cold and blue in final version.
- More dialogue between Smith, Don, John, and Judy in the "Hydroponics" garden on the "Proteus" after finding Blawp.
- Several scenes in the time bubble were cut including: scenes showing different time portals including "THUNDER PORTAL" and "SNOW PORTAL"
- New Line has released a PG version "Edited For Family Viewing" with some violence and profanity edited out.
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