Kinetic mechanism of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase

Biochemistry. 1999 Feb 23;38(8):2295-306. doi: 10.1021/bi982305k.

Abstract

IMP dehydrogenase (IMPDH) catalyzes the oxidation of IMP to XMP with conversion of NAD+ to NADH. This reaction is the rate-limiting step in de novo guanine nucleotide biosynthesis. IMPDH is a target for antitumor, antiviral, and immunosuppressive chemotherapy. We have determined the complete kinetic mechanism for IMPDH from Tritrichomonas foetus using ligand binding, isotope effect, pre-steady-state kinetic, and rapid quench kinetic experiments. Both substrates bind to the free enzyme, which suggests a random mechanism. IMP binds to the enzyme in two steps. Two steps are also involved when IMP binds to a mutant IMPDH in which the active site Cys is substituted with a Ser. This observation suggests that this second step may be a conformational change of the enzyme. No Vm isotope effect is observed when [2-2H]IMP is the substrate which indicates that hydride transfer is not rate-limiting. This result is confirmed by the observation of a pre-steady-state burst of NADH production when monitored by absorbance. However, when NADH production was monitored by fluorescence, the rate constant for the exponential phase is 5-10-fold lower than when measured by absorbance. This observation suggests that the fluorescence of enzyme-bound NADH is quenched and that this transient represents NADH release from the enzyme. The time-dependent formation and decay of [14C]E-XMP intermediates was monitored using rapid quench kinetics. These experiments indicate that both NADH release and E-XMP hydrolysis are rate-limiting and suggest that NADH release precedes hydrolysis of E-XMP.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Substitution / genetics
  • Animals
  • Binding Sites / drug effects
  • Binding Sites / genetics
  • Cysteine / genetics
  • Deuterium
  • Humans
  • IMP Dehydrogenase / chemistry*
  • IMP Dehydrogenase / genetics
  • IMP Dehydrogenase / metabolism*
  • Kinetics
  • Ligands
  • Models, Chemical
  • Mutagenesis, Site-Directed
  • Mycophenolic Acid / pharmacology
  • NAD / metabolism
  • Protein Binding / drug effects
  • Protein Binding / genetics
  • Serine / genetics
  • Spectrometry, Fluorescence
  • Thermodynamics
  • Tritrichomonas foetus / enzymology*

Substances

  • Ligands
  • NAD
  • Serine
  • Deuterium
  • IMP Dehydrogenase
  • Mycophenolic Acid
  • Cysteine