Prediction of the location and type of beta-turns in proteins using neural networks

Protein Sci. 1999 May;8(5):1045-55. doi: 10.1110/ps.8.5.1045.

Abstract

A neural network has been used to predict both the location and the type of beta-turns in a set of 300 nonhomologous protein domains. A substantial improvement in prediction accuracy compared with previous methods has been achieved by incorporating secondary structure information in the input data. The total percentage of residues correctly classified as beta-turn or not-beta-turn is around 75% with predicted secondary structure information. More significantly, the method gives a Matthews correlation coefficient (MCC) of around 0.35, compared with a typical MCC of around 0.20 using other beta-turn prediction methods. Our method also distinguishes the two most numerous and well-defined types of beta-turn, types I and II, with a significant level of accuracy (MCCs 0.22 and 0.26, respectively).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Amino Acid Sequence
  • Computer Simulation*
  • Databases, Factual
  • Models, Statistical
  • Molecular Sequence Data
  • Neural Networks, Computer*
  • Protein Structure, Secondary*