Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization

J Bacteriol. 1999 Sep;181(18):5718-24. doi: 10.1128/JB.181.18.5718-5724.1999.

Abstract

A consensus-directed search for sigma(B) promoters was used to locate potential candidates for new sigma(B)-dependent genes in Bacillus subtilis. Screening of those candidates by oligonucleotide hybridizations with total RNA from exponentially growing or ethanol-stressed cells of the wild type as well as a sigB mutant revealed 22 genes that required sigma(B) for induction by ethanol. Although almost 50% of the proteins encoded by the newly discovered sigma(B)-dependent stress genes seem to be membrane localized, biochemical functions have so far not been defined for any of the gene products. Allocation of the genes to the sigma(B)-dependent stress regulon may indicate a potential function in the establishment of a multiple stress resistance. AldY and YhdF show similarities to NAD(P)-dependent dehydrogenases and YdbP to thioredoxins, supporting our suggestion that sigma(B)-dependent proteins may be involved in the maintenance of the intracellular redox balance after stress.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus subtilis / genetics*
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Consensus Sequence
  • Ethanol / pharmacology
  • Gene Expression Regulation* / drug effects
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oligodeoxyribonucleotides
  • Promoter Regions, Genetic*
  • Sigma Factor / genetics*
  • Sigma Factor / metabolism*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Bacterial Proteins
  • Oligodeoxyribonucleotides
  • SigB protein, Bacteria
  • Sigma Factor
  • Transcription Factors
  • Ethanol