Genomic organization and genetic mapping of the bovine PREF-1 gene

Biochem Biophys Res Commun. 1999 Nov 2;264(3):662-7. doi: 10.1006/bbrc.1999.1558.

Abstract

As a potential regulator of nutrient partitioning in beef cattle, we have cloned and genetically mapped the bovine PREF-1 gene. A full-length PREF-1 cDNA was isolated by iterative purification from a mixed-tissue cDNA library to which adipose contributed mRNA. Analysis of partial cDNAs from this library revealed that the 3'-terminal exon of the bovine PREF-1 mRNA is spliced in a manner analogous to its murine ortholog. However, we have also detected a PREF-1 splice form apparently unique to cattle. Aside from this alternative selection of a splice donor in the bovine fifth exon, the exon/intron junctions of the bovine PREF-1 gene recapitulate those observed for mice. The sequences proximal to the bovine PREF-1 transcription start site are homologous to the mouse PREF-1 promoter. Importantly, the sequence experimentally identified as critical to PREF-1 "suppression in adipocyte differentiation" is conserved in the bovine gene. The bovine PREF-1 gene was mapped to the telomeric end of BTA 21 by virtue of a physically linked microsatellite with seven alleles and 285 informative meiosis.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Calcium-Binding Proteins
  • Cattle
  • Chromosome Mapping*
  • DNA, Complementary / genetics*
  • DNA, Complementary / isolation & purification
  • Genome
  • Intercellular Signaling Peptides and Proteins
  • Membrane Proteins / genetics*
  • Mice
  • Molecular Sequence Data
  • Repressor Proteins / genetics*
  • Sequence Alignment
  • Sequence Analysis

Substances

  • Calcium-Binding Proteins
  • DNA, Complementary
  • Dlk1 protein, mouse
  • Intercellular Signaling Peptides and Proteins
  • Membrane Proteins
  • Repressor Proteins

Associated data

  • GENBANK/AF181831
  • GENBANK/AF207879