Genotype profiles of rotavirus strains from children in a suburban community in Guinea-Bissau, Western Africa

J Clin Microbiol. 2000 Jan;38(1):264-7. doi: 10.1128/JCM.38.1.264-267.2000.

Abstract

The P (VP4) and G (VP7) genotypes of 167 group A rotavirus strains obtained during the period 1996 to 1998 from 149 children living in a suburban community in Guinea-Bissau, western Africa, were determined by the reverse transcription-PCR technique. A total of nine combinations including five different P types and five different G types were identified. The globally common genotype pairs P[8], G1; P[4], G2; P[8], G3 and P[8], G4 were underrepresented in this study area. We found a substantial year-to-year variation in the occurrence of the genotype combinations. In 1996 and 1997, P[6], G2 was the most frequent, whereas P[8], G1 was more common in 1998. The unusual type P[9], G3 and a few mixed infections were detected. Sixteen percent of the rotavirus-positive samples were nontypeable.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Viral*
  • Capsid / genetics*
  • Capsid Proteins*
  • Child, Preschool
  • Feces / virology
  • Genotype
  • Guinea-Bissau
  • Humans
  • Infant
  • Infant, Newborn
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus Infections / virology*

Substances

  • Antigens, Viral
  • Capsid Proteins
  • VP4 protein, Rotavirus
  • VP7 protein, Rotavirus