VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

P Kersey; H Hermjakob; R Apweiler

doi:10.1093/bioinformatics/16.11.1048

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

Bioinformatics. 2000 Nov;16(11):1048-9. doi: 10.1093/bioinformatics/16.11.1048.

Authors

P Kersey¹, H Hermjakob, R Apweiler

Affiliation

¹ EMBL Outstation Hinxton, The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK. [email protected]

PMID: 11159319
DOI: 10.1093/bioinformatics/16.11.1048

Abstract

The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches.

Availability: The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files.

Contact: [email protected]

MeSH terms

Alternative Splicing*
Animals
Computational Biology
Databases, Factual*
Humans
Internet
Protein Isoforms / genetics
Proteins / genetics*
Software*

Substances

Protein Isoforms
Proteins