Sequence and peptide-binding motif for a variant of HLA-A*0214 (A*02142) in an HIV-1-resistant individual from the Nairobi Sex Worker cohort

Immunogenetics. 2001 Feb;53(1):10-4. doi: 10.1007/s002510100299.

Abstract

As part of the ongoing study of natural HIV-1 resistance in the women of the Nairobi Sex Workers' study, we have examined a resistance-associated HLA class I allele at the molecular level. Typing by polymerase chain reaction using sequence-specific primers determined that this molecule is closely related to HLA-A*0214, one of a family of HLA-A2 supertype alleles which correlate with HIV-1 resistance in this population. Direct nucleotide sequencing shows that this molecule differs from A*0214, having a silent nucleotide substitution. We therefore propose to designate it HLA-A*02142. We have determined the peptide-binding motif of HLA-A*0214/02142 by peptide elution and bulk Edman degradative sequencing. The resulting motif, X-[Q,V]-X-X-X-K-X-X-[V,L], includes lysine as an anchor at position 6. The data complement available information on the peptide-binding characteristics of this molecule, and will be of use in identifying antigenic peptides from HIV-1 and other pathogens.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites / genetics
  • Cohort Studies
  • Female
  • HIV Infections / immunology*
  • HIV Seronegativity / immunology*
  • HIV-1 / immunology*
  • HLA-A2 Antigen / genetics*
  • HLA-DR Antigens
  • Humans
  • Kenya
  • Molecular Sequence Data
  • Mutation
  • Sex Work*

Substances

  • HLA-A*02:14 antigen
  • HLA-A2 Antigen
  • HLA-DR Antigens

Associated data

  • GENBANK/AF305699