Genetic relatedness of VP1 genes of Australian and Taiwanese rotavirus isolates

FEMS Microbiol Lett. 2001 May 1;198(2):147-50. doi: 10.1111/j.1574-6968.2001.tb10634.x.

Abstract

Gene 1 (which encodes the viral RNA-dependent RNA polymerase, VP1) of an atypical human reassortant rotavirus strain, E210 (serotype G2P1B), is unrelated to genes 1 of standard human rotaviruses. To ascertain the origin of this gene, we determined a partial sequence and found that it exhibited greatest identity to gene 1 of a Taiwanese isolate, TE83, which is representative of G2 strains that caused an epidemic of gastroenteritis in 1993. Limited sequence identity to genes 1 of standard human and animal viruses was observed. This was confirmed by phylogenetic analysis. However, hybridization analysis using an E210 gene 1-specific probe indicated that a related gene was found among other Australian G2 isolates and in a Japanese strain isolated in the 1970s.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Australia
  • DNA-Directed RNA Polymerases / genetics*
  • Genes, Viral
  • Humans
  • Phylogeny*
  • RNA, Double-Stranded / genetics
  • RNA, Double-Stranded / isolation & purification
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / classification*
  • Rotavirus / enzymology
  • Rotavirus / genetics*
  • Taiwan
  • Viral Core Proteins / genetics*
  • Viral Structural Proteins / genetics

Substances

  • RNA, Double-Stranded
  • RNA, Viral
  • VP1 protein, Rotavirus
  • Viral Core Proteins
  • Viral Structural Proteins
  • DNA-Directed RNA Polymerases