Direct diagnosis of human respiratory coronaviruses 229E and OC43 by the polymerase chain reaction

J Virol Methods. 2001 Sep;97(1-2):59-66. doi: 10.1016/s0166-0934(01)00343-3.

Abstract

An RT-PCR-hybridization was developed that amplified genetic material from the M protein gene of HCoV-229E and HCoV-OC43. The analytic sensitivity of these original primers were compared with primers defined in the N gene and described previously. The results show that 0.05 TCID50 of HCoV-229E and 0.01 TCID50 of HCoV-OC43 can be detected by this molecular method using the original method. Detection of HCoV-229E and HCoV-OC43 in clinical specimens is possible using this method: 348 respiratory specimens (202 sputum and 146 nasal aspirates) were tested with this RT-PCR-hybridization and 12 human coronavirus are detected (3%). The method could provide a useful tool for demonstrating the role of human coronavirus in infections of the respiratory tract.

MeSH terms

  • Cell Line
  • Coronavirus / classification*
  • Coronavirus / genetics
  • Coronavirus / isolation & purification*
  • Coronavirus 229E, Human / classification
  • Coronavirus 229E, Human / genetics
  • Coronavirus 229E, Human / isolation & purification
  • Coronavirus Infections / diagnosis*
  • Coronavirus Infections / virology*
  • Coronavirus M Proteins
  • Coronavirus OC43, Human / classification
  • Coronavirus OC43, Human / genetics
  • Coronavirus OC43, Human / isolation & purification
  • DNA Primers
  • Humans
  • RNA, Viral / analysis
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sensitivity and Specificity
  • Viral Matrix Proteins / genetics

Substances

  • Coronavirus M Proteins
  • DNA Primers
  • M protein, Human coronavirus OC43
  • RNA, Viral
  • Viral Matrix Proteins