Changes in populations of rhizosphere bacteria associated with take-all disease of wheat

Appl Environ Microbiol. 2001 Oct;67(10):4414-25. doi: 10.1128/AEM.67.10.4414-4425.2001.

Abstract

Take-all, caused by Gaeumannomyces graminis var. tritici, is one of the most important fungal diseases of wheat worldwide. Knowing that microbe-based suppression of the disease occurs in monoculture wheat fields following severe outbreaks of take-all, we analyzed the changes in rhizosphere bacterial communities following infection by the take-all pathogen. Several bacterial populations were more abundant on diseased plants than on healthy plants, as indicated by higher counts on a Pseudomonas-selective medium and a higher fluorescence signal in terminal restriction fragment length polymorphism analyses of amplified 16S ribosomal DNA (rDNA). Amplified rDNA restriction analysis (ARDRA) of the most abundant cultured populations showed a shift in dominance from Pseudomonas to Chryseobacterium species in the rhizosphere of diseased plants. Fluorescence-tagged ARDRA of uncultured rhizosphere washes revealed an increase in ribotypes corresponding to several bacterial genera, including those subsequently identified by partial 16S sequencing as belonging to species of alpha-, beta-, and gamma-proteobacteria, sphingobacteria, and flavobacteria. The functional significance of some of these populations was investigated in vitro. Of those isolated, only a small subset of the most abundant Pseudomonas spp. and a phlD(+) Pseudomonas sp. showed any significant ability to inhibit G. graminis var. tritici directly. When cultured strains were mixed with the inhibitory phlD(+) Pseudomonas strain, the Chryseobacterium isolates showed the least capacity to inhibit this antagonist of the pathogen, indicating that increases in Chryseobacterium populations may facilitate the suppression of take-all by 2,4-diacetylphloroglucinol-producing phlD(+) pseudomonads.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Antibiosis
  • Ascomycota / physiology*
  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / growth & development*
  • Bacteria / isolation & purification
  • Colony Count, Microbial
  • DNA, Ribosomal / analysis
  • DNA, Ribosomal / genetics
  • Molecular Sequence Data
  • Phloroglucinol / analogs & derivatives
  • Phloroglucinol / metabolism
  • Plant Diseases / microbiology
  • Plant Roots / microbiology*
  • Pseudomonas / classification
  • Pseudomonas / genetics
  • Pseudomonas / growth & development
  • Pseudomonas / isolation & purification
  • RNA, Ribosomal, 16S / genetics
  • Restriction Mapping / methods
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Triticum / microbiology*

Substances

  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • 2,4-diacetylphloroglucinol
  • Phloroglucinol

Associated data

  • GENBANK/AF375827
  • GENBANK/AF375828
  • GENBANK/AF375829
  • GENBANK/AF375830
  • GENBANK/AF375831
  • GENBANK/AF375832
  • GENBANK/AF375833
  • GENBANK/AF375834
  • GENBANK/AF375835
  • GENBANK/AF375836
  • GENBANK/AF375837
  • GENBANK/AF375838
  • GENBANK/AF375839
  • GENBANK/AF375840
  • GENBANK/AF375841
  • GENBANK/AF375842
  • GENBANK/AF375843
  • GENBANK/AF375844
  • GENBANK/AF375845
  • GENBANK/AF375846
  • GENBANK/AF375847
  • GENBANK/AF375848
  • GENBANK/AF375849
  • GENBANK/AF375850