Isolation and phylogeny of endogenous retrovirus HERV-F family in Old World monkeys. Brief report

Arch Virol. 2002;147(2):393-400. doi: 10.1007/s705-002-8327-7.

Abstract

A new human endogenous retroviral family (HERV-F) has recently been identified from human chromosome 7q31.1-q31.3 that was identical to the XA34 cDNA clone isolated from a human glioma cDNA library with an ERV-9 env probe. We investigated pol fragments of the HERV-F family from the Old World monkeys (crab-eating monkey, African green monkey, and baboon) and analyzed these with the HERV-F (Hu-XA34). Fifteen pol fragments of the HERV-F family were detected from the Old World monkeys. They showed a high degree of sequence similarity (81-99%) with that of the HERV-F (Hu-XA34). Phylogenetic analysis of pol fragments with those of the human genome distinctively showed five groups, indicating that HERV-F family could be amplified at least five times after the original integration into the monkey genome or represent integration events independently during primate evolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cercopithecinae / virology*
  • Chlorocebus aethiops / virology
  • Endogenous Retroviruses / genetics*
  • Endogenous Retroviruses / isolation & purification*
  • Gene Products, pol / genetics
  • Macaca fascicularis / virology
  • Molecular Sequence Data
  • Papio / virology
  • Phylogeny*
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • Gene Products, pol

Associated data

  • GENBANK/AB055744
  • GENBANK/AB055745
  • GENBANK/AB055746
  • GENBANK/AB055747
  • GENBANK/AB055748
  • GENBANK/AB055749
  • GENBANK/AB055750
  • GENBANK/AB055751
  • GENBANK/AB055752
  • GENBANK/AB055753
  • GENBANK/AB055754
  • GENBANK/AB055755
  • GENBANK/AB055756
  • GENBANK/AB055757
  • GENBANK/AB055758