XEMBL: distributing EMBL data in XML format

Bioinformatics. 2002 Aug;18(8):1147-8. doi: 10.1093/bioinformatics/18.8.1147.

Abstract

Data in the EMBL Nucleotide Sequence Database is traditionally available in a flat file format that has a number of known shortcomings. With XML rapidly emerging as a standard data exchange format that can address some problems of flat file formats by defining data structure and syntax, there is now a demand to distribute EMBL data in an XML format. XEMBL is a service tool that employs CORBA servers to access EMBL data, and distributes the data in XML format via a number of mechanisms.

Availability: Use of the XEMBL service is free of charge at http://www.ebi.ac.uk/xembl/, and can be accessed via web forms, CGI, and a SOAP-enabled service.

Supplementary information: Information on the EMBL Nucleotide Sequence Database is available at http://www.ebi.ac.uk/embl/. The EMBL Object Model is available at http://corba.ebi.ac.uk/models/. Information on the EMBL CORBA servers is at http://corba.ebi.ac.uk/

MeSH terms

  • Computer Communication Networks
  • Computing Methodologies
  • Database Management Systems*
  • Databases, Nucleic Acid*
  • Information Storage and Retrieval / methods*
  • Internet
  • Programming Languages*
  • Sequence Analysis / methods*