A five-residue HIV envelope helper T cell determinant: does this peptide-MHC interaction leave the binding groove half empty?

AIDS Res Hum Retroviruses. 2002 Oct 10;18(15):1141-4. doi: 10.1089/088922202320567888.

Abstract

High-resolution structures have revealed major pockets in the MHC class II peptide binding groove within a region designated Pl-P9. The region can accommodate 9-mer peptides, consistent with the observation that minimal core helper T (Th) cell determinants are usually eight or nine residues in size. Here we describe mouse Th cell hybridomas that are specific for a core peptide of only five residues (NPIIL) in the HIV envelope glycoprotein. Effective Th cell stimulation requires that these MHC class II Ia(b)-presented peptides contain amino acids flanking the minimal pentamer, but the flanking residues may be located on either the N or C terminus. To explain these findings, we suggest that mini-Th cell epitopes may effectively associate with MHC when only five (or possibly fewer) of the P1-P9 positions are filled. The remaining positions may be empty, or may be associated with a second, perhaps unrelated, peptide moiety.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Epitopes, T-Lymphocyte / immunology*
  • Gene Products, env / chemistry*
  • Gene Products, env / immunology
  • Gene Products, env / metabolism
  • HIV-1 / immunology*
  • Histocompatibility Antigens Class II / immunology*
  • Histocompatibility Antigens Class II / metabolism
  • Humans
  • Hybridomas
  • Mice
  • Mice, Inbred C57BL
  • Molecular Sequence Data
  • Peptides / chemistry
  • Peptides / immunology*
  • Peptides / metabolism
  • T-Lymphocytes, Helper-Inducer / immunology*

Substances

  • Epitopes, T-Lymphocyte
  • Gene Products, env
  • Histocompatibility Antigens Class II
  • Peptides