Limitations of stratifying sib-pair data in common disease linkage studies: an example using chromosome 10p14-10q11 in type 1 diabetes

Am J Med Genet. 2002 Nov 22;113(2):158-66. doi: 10.1002/ajmg.10737.

Abstract

IDDM10 on chromosome 10p11-q11 has been identified as a putative diabetes susceptibility locus through affected sib-pair (ASP) linkage analysis in UK nuclear families [Davies et al., 1994: Nature 371:130-136; Reed et al., 1997: Hum Mol Genet 6:1011-1016; Mein et al., 1998: Nat Genet 19:297-300]. We extended analysis of linkage to type 1 diabetes in this region by typing a total of 61 markers in a maximum of 418 UK sib-pairs (UK418; peak MLS = 3.84). We then stratified the dataset based on analyses performed previously by both our group [Mein et al., 1998: Nat Genet 19:297-300] and others [Paterson et al., 1999: Hum Hered 49:197-204; Paterson and Petronis, 1999a: Am J Med Genet 84:15-19; Paterson and Petronis, 2000a: J Med Genet 37:186-191; Paterson and Petronis, b: Eur J Hum Genet 8:145-148] and used a permutation procedure to assess the significance of the results. We conclude that the results obtained had a high probability of occurring by chance alone. These data highlight the limitations of stratifying small datasets (n < 500) by additional criteria and the recurrent problems of multiple testing in genetic analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Age Factors
  • Chromosomes, Human, Pair 10 / genetics*
  • Diabetes Mellitus, Type 1 / genetics*
  • Family Health
  • Female
  • Genetic Heterogeneity
  • Genetic Linkage
  • Genetic Predisposition to Disease / genetics
  • Genotype
  • HLA-DR Antigens / genetics
  • Humans
  • Male
  • Matched-Pair Analysis
  • Microsatellite Repeats
  • Nuclear Family
  • Sex Factors
  • Siblings*

Substances

  • HLA-DR Antigens