Self-induced structural switches in RNA

Biochimie. 2002 Sep;84(9):913-23. doi: 10.1016/s0300-9084(02)01448-7.

Abstract

Many biologically active RNAs show a switch in their secondary structure, which is accompanied by changes in their function. Such changes in secondary structure often require trans-acting factors, e.g. RNA chaperones. However, several biologically active RNAs do not require trans-acting factors for this structural switch, which is therefore indicated here as a "self-induced switch". These self-induced structural switches have several characteristics in common. They all start from a metastable structure, which is maintained for some time allowing or blocking a particular function of the RNA. Hereafter, a structural element becomes available, e.g. during transcription, triggering a rapid transition into a stable conformation, which again is accompanied by either a gain or loss of function. A further common element of this type of switches is the involvement of a branch migration or strand displacement reaction, which lowers the energy barrier of the reaction sufficiently to allow rapid refolding. Here, we review a number of these self-induced switches in RNA secondary structure as proposed for several systems. A general model for this type of switches is presented, showing its importance in the biology of functionally active RNAs.

Publication types

  • Review

MeSH terms

  • Animals
  • Base Sequence
  • Genome, Bacterial
  • Introns
  • Models, Genetic
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • RNA / chemistry*
  • RNA / genetics*
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / genetics
  • Structure-Activity Relationship
  • Thermodynamics
  • Transcription, Genetic

Substances

  • RNA, Catalytic
  • RNA