Cloning of S4D-SRCRB, a new soluble member of the group B scavenger receptor cysteine-rich family (SRCR-SF) mapping to human chromosome 7q11.23

Immunogenetics. 2002 Dec;54(9):621-34. doi: 10.1007/s00251-002-0507-z. Epub 2002 Nov 6.

Abstract

The scavenger receptor cysteine-rich superfamily (SRCR-SF) is a highly conserved group of membrane and/or secreted proteins related to the innate and adaptive immune system. Here, we report the cloning of the gene encoding human S4D-SRCRB, a novel soluble member of the SRCR-SF, which is composed of four group B SRCR domains separated by Pro-, Ser- and Thr-rich polypeptides. The longest cDNA sequence found is 2,806 bp in length and encodes a mature protein of 528 aa, with a predicted molecular mass of M(r) 55,600. The S4D-SRCRB gene is located at Chromosome 7q11.23, telomeric to the Williams-Beuren syndrome deletion. It extends over 20 kb and consists of 11 exons, with each SRCR domain being encoded by a single exon. Northern blot analysis indicated that S4D-SRCRB has a broad tissue distribution and is expressed as two major mRNA species: one of 2.8 kb, with a restricted tissue expression pattern (mainly kidney and placenta), and another of 1.5 kb, with a broader distribution. A similar mRNA expression pattern was observed during the analysis of several tumor cell lines. The highest degree of similarity found between S4D-SRCRB and other group B SRCR-SF members was with human DMBT1 (a mosaic protein composed of fourteen SRCR domains, which is involved in innate defense and epithelia polarization) and chicken 18-B (a turpentine-induced soluble acute-phase protein composed of four SRCR domains). Our data indicate that S4D-SRCRB constitutes a novel SRCR-SF member, which could be involved in basic homeostatic functions such as innate host defense.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Base Sequence
  • Cell Line
  • Chromosome Mapping
  • Chromosomes, Human, Pair 7 / genetics*
  • Cloning, Molecular
  • Cytokines / pharmacology
  • Exons / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation / drug effects
  • Humans
  • Introns / genetics
  • Membrane Proteins*
  • Molecular Sequence Data
  • Organ Specificity
  • RNA Splice Sites / genetics
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Receptors, Immunologic / chemistry*
  • Receptors, Immunologic / classification
  • Receptors, Immunologic / genetics*
  • Receptors, Lipoprotein*
  • Receptors, Scavenger
  • Scavenger Receptors, Class B
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Solubility
  • Tumor Cells, Cultured

Substances

  • Cytokines
  • Membrane Proteins
  • RNA Splice Sites
  • RNA, Messenger
  • Receptors, Immunologic
  • Receptors, Lipoprotein
  • Receptors, Scavenger
  • SSC4D protein, human
  • Scarb1 protein, mouse
  • Scavenger Receptors, Class B

Associated data

  • GENBANK/AJ306912
  • GENBANK/AJ306913
  • GENBANK/AJ306914
  • GENBANK/AJ306915
  • GENBANK/AJ306916
  • GENBANK/AJ306917
  • GENBANK/AJ306918
  • GENBANK/AJ306919
  • GENBANK/AJ306920
  • GENBANK/AJ306921
  • GENBANK/AJ306922
  • GENBANK/AJ312755