Simple cation-pi interaction between a phenyl ring and a protonated amine stabilizes an alpha-helix in water

J Am Chem Soc. 2002 Dec 18;124(50):14917-21. doi: 10.1021/ja026721a.

Abstract

Cation-pi interactions have been proposed to be important contributors to protein structure and function. In particular, these interactions have been suggested to provide significant stability at the solvent-exposed surface of a protein. We have investigated the magnitude of cation-pi interactions between phenylalanine (Phe) and lysine (Lys), ornithine (Orn), and diaminobutanoic acid (Dab) in the context of an alpha-helix and have found that only the Phe...Orn interaction provides significant stability to the helix, stabilizing it by -0.4 kcal/mol. This interaction energy is in the same range as a salt bridge in an alpha-helix, and equivalent to the recently reported Trp...Arg interaction in an alpha-helix, despite the fact that Trp...guanidinium interactions have been proposed to be stronger than Phe...ammonium interactions. These results indicate that even the simplest cation-pi interaction can provide significant stability to protein structure and demonstrate the subtle factors that can influence the observed interaction energies in designed systems.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cations
  • Circular Dichroism
  • Lysine / chemistry*
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Ornithine / chemistry*
  • Peptides / chemical synthesis
  • Peptides / chemistry*
  • Phenylalanine / chemistry*
  • Protein Structure, Secondary
  • Water / chemistry*

Substances

  • Cations
  • Peptides
  • Water
  • Phenylalanine
  • Ornithine
  • Lysine