CATMA: a complete Arabidopsis GST database

Nucleic Acids Res. 2003 Jan 1;31(1):156-8. doi: 10.1093/nar/gkg071.

Abstract

The Complete Arabidopsis Transcriptome Micro Array (CATMA) database contains gene sequence tag (GST) and gene model sequences for over 70% of the predicted genes in the Arabidopsis thaliana genome as well as primer sequences for GST amplification and a wide range of supplementary information. All CATMA GST sequences are specific to the gene for which they were designed, and all gene models were predicted from a complete reannotation of the genome using uniform parameters. The database is searchable by sequence name, sequence homology or direct SQL query, and is available through the CATMA website at http://www.catma.org/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / metabolism
  • DNA Primers
  • Databases, Nucleic Acid*
  • Genome, Plant*
  • Information Storage and Retrieval
  • Oligonucleotide Array Sequence Analysis
  • Sequence Tagged Sites
  • Transcription, Genetic

Substances

  • DNA Primers