Kinetics of unfolding the human telomeric DNA quadruplex using a PNA trap

J Am Chem Soc. 2003 Apr 2;125(13):3763-7. doi: 10.1021/ja029149w.

Abstract

The kinetics of opening of the DNA quadruplex formed by the human telomeric repeat have been investigated using real-time fluorescence resonance energy transfer (FRET) measurements with a peptide nucleic acid (PNA) trap. It has been found that this opening is zero-order with respect to PNA, indicating that the initial step is a rate-limiting internal rearrangement of the quadruplex. A study of the temperature dependence of the rate of quadruplex opening was performed and the activation energy of the process estimated to be 98 +/- 8 kJ mol(-1).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Circular Dichroism
  • DNA / chemistry*
  • Fluorescence Resonance Energy Transfer / methods
  • G-Quadruplexes
  • Humans
  • Kinetics
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry
  • Peptide Nucleic Acids / chemistry*
  • Spectrometry, Fluorescence
  • Telomere / chemistry*
  • Telomere / genetics

Substances

  • Oligonucleotides
  • Peptide Nucleic Acids
  • DNA