The three-dimensional structure of the liver X receptor beta reveals a flexible ligand-binding pocket that can accommodate fundamentally different ligands

J Biol Chem. 2003 Oct 3;278(40):38821-8. doi: 10.1074/jbc.M304842200. Epub 2003 Jun 20.

Abstract

The structures of the liver X receptor LXRbeta (NR1H2) have been determined in complexes with two synthetic ligands, T0901317 and GW3965, to 2.1 and 2.4 A, respectively. Together with its isoform LXRalpha (NR1H3) it regulates target genes involved in metabolism and transport of cholesterol and fatty acids. The two LXRbeta structures reveal a flexible ligand-binding pocket that can adjust to accommodate fundamentally different ligands. The ligand-binding pocket is hydrophobic but with polar or charged residues at the two ends of the cavity. T0901317 takes advantage of this by binding to His-435 close to H12 while GW3965 orients itself with its charged group in the opposite direction. Both ligands induce a fixed "agonist conformation" of helix H12 (also called the AF-2 domain), resulting in a transcriptionally active receptor.

MeSH terms

  • Alanine / chemistry
  • Binding Sites
  • Cholesterol / metabolism
  • DNA-Binding Proteins
  • Dimerization
  • Electrons
  • Escherichia coli / metabolism
  • Histidine / chemistry
  • Humans
  • Ligands
  • Liver X Receptors
  • Models, Chemical
  • Models, Molecular
  • Models, Statistical
  • Orphan Nuclear Receptors
  • Protein Binding
  • Protein Conformation
  • Protein Isoforms
  • Protein Structure, Tertiary
  • Receptors, Cytoplasmic and Nuclear / chemistry*
  • Receptors, Cytoplasmic and Nuclear / metabolism
  • Transcription Factors / metabolism
  • Transcription, Genetic
  • X-Rays

Substances

  • DNA-Binding Proteins
  • Ligands
  • Liver X Receptors
  • NR1H2 protein, human
  • NR1H3 protein, human
  • Orphan Nuclear Receptors
  • Protein Isoforms
  • Receptors, Cytoplasmic and Nuclear
  • Transcription Factors
  • Histidine
  • Cholesterol
  • Alanine

Associated data

  • PDB/1PQ6
  • PDB/1PQ9
  • PDB/1PQC