A quantitative reverse transcriptase-polymerase chain reaction for HIV-1-specific RNA species

J Virol Methods. 1992 Dec 1;40(3):331-45. doi: 10.1016/0166-0934(92)90091-q.

Abstract

The ability to evaluate the patterns and levels of human immunodeficiency virus type I (HIV-1)-specific RNA in latently and productively-infected cell lines, and primary human cells, is critical to the understanding of HIV-1 expression in cell cultures and possibly in vivo. We have developed a quantitative reverse transcriptase-polymerase chain reaction (RT-PCR), utilizing in vitro transcribed RNA standards, to evaluate the copy number per cell and per microgram of total cellular RNA of multiply-spliced, unspliced and total HIV-1-specific RNA species. The latently-infected monocytic and T-lymphocyte cell lines, U1 and ACH-2 respectively, are shown to express between 10(4) to 10(6) copies of total HIV-1-specific RNA per cell, based on the state of cellular stimulation. A dramatic increase of unspliced HIV-1-specific RNA in both the U1 cell line and the ACH-2 cell line is demonstrated by this quantitative RT-PCR, 24 h after stimulation with phorbol esters. These data suggest that a single integrated HIV-1 provirus can rapidly express large quantities of HIV-1-specific RNA. Quantitative RT-PCR, for HIV-1-specific transcripts, should prove extremely useful in evaluating retroviral load and pathogenesis in cell cultures and in vivo.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Cell Line
  • DNA, Viral / genetics
  • Evaluation Studies as Topic
  • HIV Reverse Transcriptase
  • HIV-1 / enzymology
  • HIV-1 / genetics*
  • Humans
  • Molecular Sequence Data
  • Oligonucleotide Probes
  • Polymerase Chain Reaction / methods*
  • RNA Splicing
  • RNA, Viral / genetics*
  • RNA-Directed DNA Polymerase
  • Virology / methods*

Substances

  • DNA, Viral
  • Oligonucleotide Probes
  • RNA, Viral
  • HIV Reverse Transcriptase
  • RNA-Directed DNA Polymerase