Automated DNA sequencing and analysis of 106 kilobases from human chromosome 19q13.3

Nat Genet. 1992 Apr;1(1):34-9. doi: 10.1038/ng0492-34.

Abstract

A total of 116,118 basepairs (bp) derived from three cosmids spanning the ERCC1 locus of human chromosome 19q13.3 have been sequenced with automated fluorescence-based sequencers and analysed by polymerase chain reaction amplification and computer methods. The assembled sequence forms two contigs totalling 105,831 bp, which contain a human fosB proto-oncogene, a gene encoding a protein phosphatase, two genes of unknown function and the previously-characterized ERCC1 DNA repair gene. This light band region has a high average density of 1.4 Alu repeats per kilobase. Human chromosome light bands could therefore contain up to 75,000 genes and 1.5 million Alu repeats.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / genetics
  • Base Sequence
  • Chromosomes, Human, Pair 19*
  • Cosmids
  • DNA / analysis
  • DNA / genetics*
  • Gene Expression
  • Genes, fos
  • Humans
  • Mice
  • Molecular Sequence Data
  • Proto-Oncogene Mas
  • Proto-Oncogene Proteins c-fos*
  • Repetitive Sequences, Nucleic Acid
  • Sequence Analysis, DNA / methods*
  • Sequence Homology, Nucleic Acid
  • Species Specificity

Substances

  • Bacterial Proteins
  • FOSB protein, human
  • Fosb protein, mouse
  • MAS1 protein, human
  • Proto-Oncogene Mas
  • Proto-Oncogene Proteins c-fos
  • DNA

Associated data

  • GENBANK/M63796
  • GENBANK/M89651