A gene homologous to topoisomerase II in African swine fever virus

Virology. 1992 Jun;188(2):938-47. doi: 10.1016/0042-6822(92)90558-7.

Abstract

A putative topoisomerase II gene of African swine fever virus was mapped using a degenerate oligonucleotide probe derived from a region highly conserved in type II topoisomerases. The gene is located within EcoRI fragments P and H of the African swine fever virus genome. Sequencing of this region has revealed a long open reading frame, designated P1192R, encoding a protein of 1192 amino acids, with a predicted molecular weight of 135,543. Open reading frame P1192R is transcribed late after infection into a 4.6-kb RNA. The deduced amino acid sequence of this open reading frame shares significant similarity with topoisomerase II sequences from different sources, with percentages of identity between 23 and 29%. The evolutionary relationships among the topoisomerase II sequences of ASF virus, eukaryotes and prokaryotes were analyzed and a phylogenetic tree was established. The tree indicates that the ASF virus topoisomerase II gene was present in the virus genome before protozoa, yeasts, and metazoa diverged.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • African Swine Fever Virus / genetics*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Biological Evolution
  • DNA Topoisomerases, Type II / genetics*
  • DNA, Viral / genetics
  • Gene Expression
  • Genes, Viral*
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides / chemistry
  • RNA, Messenger / genetics
  • Restriction Mapping
  • Sequence Alignment
  • Vero Cells
  • Viral Structural Proteins / genetics*

Substances

  • DNA, Viral
  • Oligodeoxyribonucleotides
  • RNA, Messenger
  • Viral Structural Proteins
  • DNA Topoisomerases, Type II

Associated data

  • GENBANK/M88699
  • GENBANK/X59623