Sequential 1H and 15N NMR assignments and secondary structure of a recombinant anti-digoxin antibody VL domain

Biochemistry. 1992 Jun 2;31(21):5033-43. doi: 10.1021/bi00136a017.

Abstract

A uniformly 15N-labeled recombinant light-chain variable (VL) domain from the anti-digoxin antibody 26-10 has been investigated by heteronuclear two-dimensional (2D) and three-dimensional (3D) NMR spectroscopy. Complementary homonuclear 2D NMR studies of the unlabeled VL domain were also performed. Sequence-specific assignments for 97% of the main-chain and 70% of the side-chain proton resonances have been obtained. Patterns of nuclear Overhauser effects observed in 2D NOESY, 3D NOESY-HSQC, and 3D NOESY-TOCSY-HSQC spectra afford a detailed characterization of the VL domain secondary structure in solution. The observed secondary structure--a nine-stranded antiparallel beta-barrel--corresponds to that observed crystallographically for VL domains involved in quaternary associations. The locations of slowly exchanging amide protons have been discerned from a 2D TOCSY spectrum recorded after dissolving the protein in 2H2O. Strands B, C, E, and F are found to be particularly stable. The possible consequences of these results for domain-domain interactions are discussed.

MeSH terms

  • Amino Acid Sequence
  • Antigen-Antibody Reactions
  • Digoxin / immunology*
  • Immunoglobulin Fragments / chemistry*
  • Immunoglobulin Fragments / genetics
  • Immunoglobulin Fragments / immunology
  • Immunoglobulin Variable Region / chemistry*
  • Immunoglobulin Variable Region / genetics
  • Immunoglobulin Variable Region / immunology
  • Immunoglobulins / chemistry
  • Immunoglobulins / genetics
  • Immunoglobulins / immunology
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Molecular Structure
  • Nitrogen Isotopes
  • Protons
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / immunology

Substances

  • Immunoglobulin Fragments
  • Immunoglobulin Variable Region
  • Immunoglobulins
  • Nitrogen Isotopes
  • Protons
  • Recombinant Proteins
  • immunoglobulin Fv
  • Digoxin