Mapping the binding interface of the cytochrome b5-cytochrome c complex by nuclear magnetic resonance

Biochemistry. 2003 Dec 23;42(50):14774-84. doi: 10.1021/bi030145t.

Abstract

The interaction between bovine cytochrome b(5) (cyt b(5)) and horse heart cytochrome c (cyt c) is investigated by NMR spectroscopy. Chemical shifts of cyt b(5) backbone resonances and side chain methyl resonances were monitored as a function of cyt c concentration. The shifts are small but saturatable and indicate that the binding of cyt b(5) with cyt c is in fast exchange. An equilibrium association constant of (6 +/- 3) x 10(4) M(-1) was obtained with a lower limit of 180 s(-1) for the dissociation rate of the complex. To resolve considerable ambiguities in the interpretation of the chemical shift mapping, (15)N relaxation experiments and cross-saturation experiments were used as alternative methods to map the cyt b(5)-cyt c binding interface. Results from the three experiments combined demonstrate that the conserved negatively charged region of cyt b(5) surrounding the solvent-exposed heme edge is involved in the interaction with cyt c. These data support the models proposed by Salemme and Mauk [(1976) J. Mol. Biol. 102, 563-568; (1993) Biochemistry 32, 6613-6623].

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Binding Sites
  • Carbon Isotopes / chemistry
  • Cattle
  • Conserved Sequence
  • Cytochromes b5 / chemistry*
  • Cytochromes c / chemistry*
  • Horses
  • Models, Chemical
  • Models, Molecular
  • Nitrogen Isotopes / chemistry
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Mapping / methods*
  • Protein Binding
  • Protein Conformation
  • Surface Properties
  • Thermodynamics

Substances

  • Carbon Isotopes
  • Nitrogen Isotopes
  • Cytochromes c
  • Cytochromes b5