High diversity among environmental Escherichia coli isolates from a bovine feedlot

Appl Environ Microbiol. 2004 Mar;70(3):1528-36. doi: 10.1128/AEM.70.3.1528-1536.2004.

Abstract

Approximately 280 Escherichia coli isolates were isolated from a bovine feedlot at the University of Connecticut campus via enrichment in lauryl tryptose broth and random selection from MacConkey plates. The E. coli subspecies diversity was estimated by employing whole-cell BOX-PCR genomic fingerprints. A total of 89 distinct operational taxonomic units (OTUs) were identified by employing a criterion of 85% fingerprint similarity as a surrogate for an OTU, while the Chao1 index estimated the E. coli population richness at 128 OTUs. One genotype (at a similarity level of 60%) dominated the population at 66% regardless of sampling depth or location, while no significant vertical distribution pattern was observed in terms of genotype, mobility, antibiotic resistance profile, or biofilm-forming ability. Motility, measured by a soft agar assay, had a very broad range among the E. coli population and was positively correlated with biofilm-forming ability in minimal medium (Spearman's rank correlation coefficient r = 0.619, P < 10(-4)) but not in Luria broth. Only an estimated 48% of the population possessed gene agn43, which encodes Ag43, a phase-variable outer membrane protein that has been implicated in biofilm formation in minimal medium. We observed significantly more biofilm formation in both minimal medium and Luria broth for agn43(+) strains, with a larger effect in minimal medium. This study represents an exhaustive inventory of extant E. coli population diversity at a bovine feedlot and reveals significant subspecies heterogeneity in interfacial behavior.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adhesins, Bacterial / genetics
  • Adhesins, Escherichia coli / genetics
  • Animal Feed / microbiology*
  • Animals
  • Antigens, Bacterial / genetics
  • Bacterial Outer Membrane Proteins / genetics
  • Base Sequence
  • Biofilms / growth & development
  • Cattle
  • DNA Fingerprinting
  • DNA, Bacterial / genetics
  • Enterobacteriaceae / classification
  • Enterobacteriaceae / genetics
  • Enterobacteriaceae / isolation & purification
  • Environmental Microbiology*
  • Escherichia coli / classification
  • Escherichia coli / genetics
  • Escherichia coli / isolation & purification*
  • Escherichia coli / physiology
  • Escherichia coli Proteins / genetics
  • Fimbriae Proteins / genetics
  • Genes, Bacterial
  • Genetic Variation
  • Genotype
  • Phenotype
  • Polymerase Chain Reaction
  • Soil Microbiology
  • Species Specificity

Substances

  • Adhesins, Bacterial
  • Adhesins, Escherichia coli
  • Antigens, Bacterial
  • Bacterial Outer Membrane Proteins
  • DNA, Bacterial
  • Escherichia coli Proteins
  • antigen 43, E coli
  • fimH protein, E coli
  • Fimbriae Proteins