Conformational changes and subunit communication in tryptophan synthase: effect of substrates and substrate analogs

Biochemistry. 1992 Aug 25;31(33):7535-42. doi: 10.1021/bi00148a014.

Abstract

The transmission of regulatory signals between the alpha- and beta-subunits of the tryptophan synthase alpha 2 beta 2 complex from Salmonella typhimurium has been investigated by monitoring the luminescence properties of the enzyme in the presence and in the absence of the alpha-subunit ligand DL-alpha-glycerol 3-phosphate, the alpha- and beta-subunit substrate indole, and the beta-subunit substrate analog L-histidine. The beta-subunit contains as intrinsic probes Trp-177 and pyridoxal 5'-phosphate, whereas the alpha-subunit has been mutagenized by replacing Ala-129 with a Trp residue. In contrast to the inertness of L-histidine, DL-alpha-glycerol 3-phosphate was found (i) to alter the phosphorescence spectrum of Trp-129, (ii) to shift the fluorescence thermal quenching profile of both Trp-177 and coenzyme to higher temperature, (iii) to slow down the triplet decay kinetics of Trp-177 in fluid solution, and (iv) to affect the equilibrium between different conformations of the enzyme. These findings provide direct evidence that DL-alpha-glycerol 3-phosphate binding affects the structure of the alpha-subunit and, in the presence of coenzyme, induces a conformational change in the beta-subunit that leads to a considerably more rigid structure. As opposed to DL-alpha-glycerol 3-phosphate, the shortening of the phosphorescence lifetime upon indole binding suggests that this substrate increases structural fluctuations in the beta-subunit. Implications for the mechanism of the allosteric regulation between alpha- and beta-subunits are discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Apoenzymes / chemistry
  • Apoenzymes / metabolism
  • Base Sequence
  • Genes, Bacterial
  • Glycerophosphates / metabolism*
  • Histidine / metabolism
  • Luminescent Measurements
  • Macromolecular Substances
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Oligodeoxyribonucleotides
  • Protein Conformation
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Salmonella typhimurium / enzymology*
  • Salmonella typhimurium / genetics
  • Thermodynamics
  • Tryptophan Synthase / chemistry*
  • Tryptophan Synthase / metabolism*
  • Tryptophan*

Substances

  • Apoenzymes
  • Glycerophosphates
  • Macromolecular Substances
  • Oligodeoxyribonucleotides
  • Recombinant Proteins
  • Histidine
  • Tryptophan
  • alpha-glycerophosphoric acid
  • Tryptophan Synthase