The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter

Nat Struct Mol Biol. 2004 Jun;11(6):544-50. doi: 10.1038/nsmb757. Epub 2004 May 2.

Abstract

The sigma(70) subunit of RNA polymerase plays an essential role in transcription initiation. In addition, sigma(70) has a critical regulatory role during transcription elongation at the bacteriophage lambda late promoter, lambda P(R'). At this promoter, sigma(70) mediates a pause in early elongation through contact with a DNA sequence element in the initially transcribed region that resembles a promoter -10 element. Here we provide evidence that sigma(70) also mediates a pause in early elongation at the lac promoter (plac). Like that at lambda P(R'), the pause at plac is facilitated by a sequence element in the initially transcribed region that resembles a promoter -10 element. Using biophysical analysis, we demonstrate that the pause-inducing sequence element at plac stabilizes the interaction between sigma(70) and the remainder of the transcription elongation complex. Bioinformatic analysis suggests that promoter-proximal sigma(70)-dependent pauses may play a role in the regulation of many bacterial promoters.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • DNA-Directed RNA Polymerases / physiology*
  • Escherichia coli Proteins / physiology
  • Lac Operon
  • Promoter Regions, Genetic*
  • Protein Binding
  • Protein Subunits / physiology
  • Sigma Factor / physiology*
  • Transcription, Genetic*

Substances

  • Escherichia coli Proteins
  • Protein Subunits
  • Sigma Factor
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases