Protein design to understand peptide ligand recognition by tetratricopeptide repeat proteins

Protein Eng Des Sel. 2004 Apr;17(4):399-409. doi: 10.1093/protein/gzh047. Epub 2004 May 27.

Abstract

Protein design aims to understand the fundamentals of protein structure by creating novel proteins with pre-specified folds. An equally important goal is to understand protein function by creating novel proteins with pre-specified activities. Here we describe the design and characterization of a tetratricopeptide (TPR) protein, which binds to the C-terminal peptide of the eukaryotic chaperone Hsp90. The design emphasizes the importance of both direct, short-range protein-peptide interactions and of long-range electrostatic optimization. We demonstrate that the designed protein binds specifically to the desired peptide and discriminates between it and the similar C-terminal peptide of Hsp70.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Cloning, Molecular
  • HSP90 Heat-Shock Proteins / metabolism
  • Ligands
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptides / chemistry
  • Peptides / metabolism*
  • Repetitive Sequences, Amino Acid*
  • Sequence Homology, Amino Acid
  • Static Electricity

Substances

  • HSP90 Heat-Shock Proteins
  • Ligands
  • Peptides