Determination of the DNA binding site of the GAL4 protein. A photo-CIDNP study

FEBS Lett. 1992 Mar 16;299(3):205-8. doi: 10.1016/0014-5793(92)80115-w.

Abstract

After the assignment of 1H NMR signals of aromatic side chains by means of specific deuteration, we analyzed the DNA binding site of GAL4 by measuring photo-CIDNP spectra. The results showed that Trp36 is involved in both the specific interaction with UASG and non-specific DNA binding. This residue is located inside the Cys-rich region, but outside the putative Zn-finger. The photo-CIDNP spectrum also showed that the side chains of Tyr40 and His53 are not exposed on the surface of the protein.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites
  • DNA-Binding Proteins / chemistry*
  • Fungal Proteins / chemistry*
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Peptide Fragments / chemistry*
  • Protein Conformation
  • Saccharomyces cerevisiae Proteins*
  • Sequence Homology, Nucleic Acid
  • Transcription Factors / chemistry*

Substances

  • DNA-Binding Proteins
  • Fungal Proteins
  • GAL4 protein, S cerevisiae
  • Peptide Fragments
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors