New method for estimating bacterial cell abundances in natural samples by use of sublimation

Appl Environ Microbiol. 2004 Oct;70(10):5923-8. doi: 10.1128/AEM.70.10.5923-5928.2004.

Abstract

We have developed a new method based on the sublimation of adenine from Escherichia coli to estimate bacterial cell counts in natural samples. To demonstrate this technique, several types of natural samples, including beach sand, seawater, deep-sea sediment, and two soil samples from the Atacama Desert, were heated to a temperature of 500 degrees C for several seconds under reduced pressure. The sublimate was collected on a cold finger, and the amount of adenine released from the samples was then determined by high-performance liquid chromatography with UV absorbance detection. Based on the total amount of adenine recovered from DNA and RNA in these samples, we estimated bacterial cell counts ranging from approximately 10(5) to 10(9) E. coli cell equivalents per gram. For most of these samples, the sublimation-based cell counts were in agreement with total bacterial counts obtained by traditional DAPI (4,6-diamidino-2-phenylindole) staining.

Publication types

  • Comparative Study
  • Evaluation Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenine / analysis
  • Chromatography, High Pressure Liquid
  • Colony Count, Microbial / instrumentation
  • Colony Count, Microbial / methods*
  • DNA / analysis
  • Environmental Microbiology*
  • Escherichia coli / chemistry
  • Fluorescent Dyes
  • Geologic Sediments / microbiology
  • Hot Temperature
  • Indoles
  • Seawater / microbiology
  • Soil Microbiology
  • Staining and Labeling

Substances

  • Fluorescent Dyes
  • Indoles
  • DAPI
  • DNA
  • Adenine