An enhanced Java graph applet interface for visualizing interactomes

Aaron N Chang; Jason McDermott; Ram Samudrala

doi:10.1093/bioinformatics/bti237

An enhanced Java graph applet interface for visualizing interactomes

Bioinformatics. 2005 Apr 15;21(8):1741-2. doi: 10.1093/bioinformatics/bti237. Epub 2004 Dec 21.

Authors

Aaron N Chang¹, Jason McDermott, Ram Samudrala

Affiliation

¹ Biomedical and Health Informatics, University of Washington, Seattle, WA 98195, USA.

PMID: 15613388
DOI: 10.1093/bioinformatics/bti237

Abstract

We have developed several new navigation features for a Java graph applet previously released for visualizing protein-protein interactions. This graph viewer can be used to navigate any molecular interactome dataset. We have successfully implemented this tool for exploring protein networks stored in the Bioverse interaction database.

Availability: http://bioverse.compbio.washington.edu/viewer

Contact: [email protected].

Publication types

Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Research Support, U.S. Gov't, P.H.S.

MeSH terms

Animals
Computer Graphics*
Gene Expression Regulation / physiology*
Humans
Programming Languages
Protein Interaction Mapping / methods*
Proteome / metabolism*
Signal Transduction / physiology*
Software*
User-Computer Interface*

Substances

Proteome

Grants and funding

1T15LM07441-01/LM/NLM NIH HHS/United States