Small, fuzzy and interpretable gene expression based classifiers

Bioinformatics. 2005 May 1;21(9):1964-70. doi: 10.1093/bioinformatics/bti287. Epub 2005 Jan 20.

Abstract

Motivation: Interpretation of classification models derived from gene-expression data is usually not simple, yet it is an important aspect in the analytical process. We investigate the performance of small rule-based classifiers based on fuzzy logic in five datasets that are different in size, laboratory origin and biomedical domain.

Results: The classifiers resulted in rules that can be readily examined by biomedical researchers. The fuzzy-logic-based classifiers compare favorably with logistic regression in all datasets.

Availability: Prototype available upon request.

Publication types

  • Evaluation Study
  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.
  • Validation Study

MeSH terms

  • Algorithms*
  • Artificial Intelligence
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / metabolism*
  • Cluster Analysis
  • Fuzzy Logic*
  • Gene Expression Profiling / methods*
  • Humans
  • Neoplasm Proteins / genetics
  • Neoplasm Proteins / metabolism*
  • Neoplasms / genetics
  • Neoplasms / metabolism*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Pattern Recognition, Automated / methods*
  • Software

Substances

  • Biomarkers, Tumor
  • Neoplasm Proteins