The FTIR spectra were measured for a self-assembled film of the anti-ferroelectric liquid crystal (AFLC) molecules over a temperature range of 40-150 degrees C. The frequency and intensity variations of the infrared spectra were discussed in terms of changes in molecular orientation, conformation and intra- and/or inter-molecular interaction during phase transitions. The two-dimensional (2d) correlation analysis revealed that two hydrocarbon chains have different orientation behaviors, the shorter hydrocarbon chain is parallel to molecular long axis and the longer one is perpendicular to it. The splitting of the C=O stretching band indicated that the s-cis and the s-trans conformers of the ester group coexist in the self-assembly film. During the phase transitions, in mesogen part the C=O group adjacent to the chiral part is first response with temperature changing, following the C=O group between two phenyl rings, and eventually the phenyl rings; and the respondence with temperature of methyl is slower than that of methylene in alkyl chains.