A universal plasmid library encoding all permutations of small interfering RNA

Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2356-61. doi: 10.1073/pnas.0401549101. Epub 2005 Feb 4.

Abstract

Small interfering RNA (siRNA) is normally designed to silence preselected known genes. Such selections are inevitably prone to bias as a result of limited knowledge about the biological process, transcript identity, and functions. A library that contains all permutations of siRNA could avoid such problems. In this paper, it is shown that 5 x 10(7) siRNA-encoding plasmids can be constructed in a single tube by using vectors with two mutated RNA polymerase III promoters arranged in a convergent manner. Such a library was used to carry out genomewide screening of functional genes in a phenotype-driven manner. Multiple siRNAs that induce a significant increase of cell proliferation speed were identified.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Base Sequence
  • Cell Line
  • Cell Proliferation
  • DNA Polymerase III / genetics
  • Gene Library*
  • Gene Silencing
  • Genetic Vectors
  • Humans
  • Molecular Sequence Data
  • Plasmids / genetics*
  • Promoter Regions, Genetic
  • RNA, Small Interfering / genetics*
  • Transfection

Substances

  • RNA, Small Interfering
  • DNA Polymerase III