Sequence-specific DNA-binding proteins are components of a nuclear matrix-attachment site

Proc Natl Acad Sci U S A. 1992 May 1;89(9):4178-82. doi: 10.1073/pnas.89.9.4178.

Abstract

We have identified a nuclear matrix-attachment region within an upstream element of a human H4 histone gene promoter. Nuclear matrix proteins, isolated and solubilized from HeLa S3 cells, were found to interact with sequence specificity at this matrix-attachment region. Several types of assays for protein-DNA interaction showed that the minimal sequence for the nuclear matrix protein-DNA interaction was 5'-TGACGTCCATG-3'; the underlined region corresponds to the core consensus sequence for ATF transcription factor binding. Two proteins with molecular masses of 43 and 54 kDa were identified by UV-crosslinking analysis as integral components of this protein-DNA complex. The molecular masses of these proteins and the ATF-binding site consensus sequence suggest that these proteins are members of the ATF family. Our results provide direct evidence for nuclear matrix localization of sequence-specific DNA-binding factors for an actively transcribed gene. The proximity of a strong positive transcriptional regulatory element to the matrix-attachment region of this gene suggests that the nuclear matrix may serve to localize and concentrate trans-acting factors that facilitate regulation of gene expression.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites
  • Consensus Sequence
  • Cross-Linking Reagents
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • HeLa Cells
  • Histones / genetics*
  • Humans
  • Molecular Sequence Data
  • Molecular Weight
  • Nuclear Matrix / ultrastructure*
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / metabolism*
  • Promoter Regions, Genetic
  • Restriction Mapping

Substances

  • Cross-Linking Reagents
  • DNA-Binding Proteins
  • Histones
  • Nuclear Proteins