One-step nested PCR for detection of 2 LTR circles in PBMCs of HIV-1 infected patients with no detectable plasma HIV RNA

J Virol Methods. 2005 Apr;125(1):11-3. doi: 10.1016/j.jviromet.2004.11.016. Epub 2005 Jan 26.

Abstract

A highly sensitive nested PCR was carried out in order to detect 2 LTR circles as a marker of recent and ongoing viral replication in HIV-1 infected patients with HIV plasma RNA undetectable. This "in house" two-step nested PCR is very sensitive, but it is not feasible for routine tests and presents a high risk of contamination. In order to reduce the time of reactions and crossover contamination, the possibility was explored to carry out a single step nested PCR, in which the two successive amplification rounds are carried out in the same tube. This single step nested PCR has the same sensitivity of the two-step nested, is easy to conduct and requires a short time of reaction. The two different PCR methods were compared and the clinical use of monitoring 2 LTR DNA circles in HIV-1 infected patients with undetectable plasma viral load is discussed.

Publication types

  • Evaluation Study

MeSH terms

  • Biomarkers
  • HIV Infections / virology*
  • HIV Long Terminal Repeat / genetics*
  • HIV-1 / genetics
  • HIV-1 / growth & development
  • HIV-1 / isolation & purification*
  • Humans
  • Polymerase Chain Reaction*
  • Proviruses / genetics
  • Proviruses / growth & development
  • Proviruses / isolation & purification*
  • RNA, Viral / blood*
  • Sensitivity and Specificity

Substances

  • Biomarkers
  • RNA, Viral