Crystal engineering yields crystals of cyclophilin D diffracting to 1.7 A resolution

Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):513-9. doi: 10.1107/S0907444905003070. Epub 2005 Apr 20.

Abstract

In the pharmaceutical industry, knowledge of the three-dimensional structure of a specific target facilitates the drug-discovery process. Despite possessing favoured analytical properties such as high purity and monodispersion in light scattering, some proteins are not capable of forming crystals suitable for X-ray analysis. Cyclophilin D, an isoform of cyclophilin that is expressed in the mitochondria, was selected as a drug target for the treatment of cardiac disorders. As the wild-type enzyme defied all attempts at crystallization, protein engineering on the enzyme surface was performed. The K133I mutant gave crystals that diffracted to 1.7 A resolution using in-house X-ray facilities and were suitable for soaking experiments. The crystals were very robust and diffraction was maintained after soaking in 25% DMSO solution: excellent conditions for the rapid analysis of complex structures including crystallographic fragment screening.

MeSH terms

  • Crystallization
  • Crystallography, X-Ray
  • Cyclophilins / chemistry*
  • Cyclophilins / genetics
  • Cyclophilins / isolation & purification
  • DNA / genetics
  • DNA / isolation & purification
  • Dimethyl Sulfoxide
  • Light
  • Mutagenesis, Site-Directed
  • Peptidyl-Prolyl Isomerase F
  • Peptidylprolyl Isomerase / chemistry
  • Plasmids / genetics
  • Point Mutation / genetics
  • Protein Engineering
  • Reverse Transcriptase Polymerase Chain Reaction
  • Scattering, Radiation
  • Solvents
  • Spectrometry, Fluorescence
  • Ultracentrifugation

Substances

  • Peptidyl-Prolyl Isomerase F
  • Solvents
  • DNA
  • Cyclophilins
  • Peptidylprolyl Isomerase
  • Dimethyl Sulfoxide