CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

Mark A van de Wiel; Serge J Smeets; Ruud H Brakenhoff; Bauke Ylstra

doi:10.1093/bioinformatics/bti489

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

Bioinformatics. 2005 Jul 15;21(14):3193-4. doi: 10.1093/bioinformatics/bti489. Epub 2005 May 6.

Authors

Mark A van de Wiel¹, Serge J Smeets, Ruud H Brakenhoff, Bauke Ylstra

Affiliation

¹ Department of Mathematics and Computer Science, Technische Universiteit Eindhoven PO Box 513, 5600 MB, Eindhoven, The Netherlands. [email protected]

PMID: 15879450
DOI: 10.1093/bioinformatics/bti489

Abstract

We compute P-values, based on the Wilcoxon test with ties, to compare two conditions with array comparative genomic hybridization data, and we provide a simple interface to export and plot these P-values.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms*
Chromosome Mapping / methods*
Models, Genetic*
Nucleic Acid Hybridization / methods*
Oligonucleotide Array Sequence Analysis / methods*
Sequence Analysis, DNA / methods*
Software*
Statistics, Nonparametric
User-Computer Interface