An active role for tRNA in decoding beyond codon:anticodon pairing

Science. 2005 May 20;308(5725):1178-80. doi: 10.1126/science.1111408.

Abstract

During transfer RNA (tRNA) selection, a cognate codon:anticodon interaction triggers a series of events that ultimately results in the acceptance of that tRNA into the ribosome for peptide-bond formation. High-fidelity discrimination between the cognate tRNA and near- and noncognate ones depends both on their differential dissociation rates from the ribosome and on specific acceleration of forward rate constants by cognate species. Here we show that a mutant tRNA(Trp) carrying a single substitution in its D-arm achieves elevated levels of miscoding by accelerating these forward rate constants independent of codon:anticodon pairing in the decoding center. These data provide evidence for a direct role for tRNA in signaling its own acceptance during decoding and support its fundamental role during the evolution of protein synthesis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Anticodon
  • Base Pairing
  • Codon
  • Codon, Terminator
  • Dipeptides / biosynthesis
  • GTP Phosphohydrolases / metabolism
  • Guanosine Triphosphate / metabolism
  • Hydrolysis
  • Kinetics
  • Mutation
  • Nucleic Acid Conformation
  • Peptide Elongation Factor Tu / metabolism
  • Protein Biosynthesis*
  • RNA, Messenger / metabolism
  • RNA, Transfer, Trp / chemistry*
  • RNA, Transfer, Trp / genetics
  • RNA, Transfer, Trp / metabolism*
  • Ribosomes / metabolism*

Substances

  • Anticodon
  • Codon
  • Codon, Terminator
  • Dipeptides
  • RNA, Messenger
  • RNA, Transfer, Trp
  • Guanosine Triphosphate
  • GTP Phosphohydrolases
  • Peptide Elongation Factor Tu