TRAMPLE: the transmembrane protein labelling environment

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W198-201. doi: 10.1093/nar/gki440.

Abstract

TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alpha-helices), secondary structure and fast fold recognition. TRAMPLE also includes a complete content management system to manage the results of the predictions. Each user of the server has his/her own workplace, where the data can be stored, organized, accessed and annotated with documents through a simple web-based interface. In this manner, TRAMPLE significantly improves usability with respect to other more traditional web servers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Computer Security
  • Database Management Systems
  • Internet
  • Membrane Proteins / chemistry*
  • Protein Folding
  • Protein Sorting Signals
  • Protein Structure, Secondary
  • Sequence Analysis, Protein / methods*
  • Software*

Substances

  • Membrane Proteins
  • Protein Sorting Signals