Away from the edge II: in-house Se-SAS phasing with chromium radiation

Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. doi: 10.1107/S0907444905010644. Epub 2005 Jun 24.

Abstract

Recently, the demands of high-throughput macromolecular crystallography have driven continuous improvements in phasing methods, data-collection protocols and many other technologies. Single-wavelength anomalous scattering (SAS) phasing with chromium X-ray radiation opens a new possibility for phasing a protein with data collected in-house and has led to several successful examples of de novo structure solution using only weak anomalous scatterers such as sulfur. To further reduce data-collection time and make SAS phasing more robust, it is natural to combine selenomethionine-derivatized protein (SeMet protein) with Cr Kalpha radiation to take advantage of the larger anomalous scattering signal from selenium (f'' = 2.28 e(-)) compared with sulfur (f'' = 1.14 e(-)). As reported herein, the crystal structure of a putative chorismate mutase from Clostridium thermocellum was determined using Se-SAS with Cr Kalpha radiation. Each protein molecule contains eight selenomethionine residues in 148 amino-acid residues, providing a calculated Bijvoet ratio of about 3.5% at the Cr Kalpha wavelength. A single data set to 2.2 A resolution with approximately ninefold redundancy was collected using an imaging-plate detector coupled with a Cr source. Structure solution, refinement and deposition to the Protein Data Bank were performed within 9 h of the availability of the scaled diffraction data. The procedure used here is applicable to many other proteins and promises to become a routine pathway for in-house high-throughput crystallography.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Chorismate Mutase / chemistry*
  • Chromium / chemistry*
  • Clostridium thermocellum / enzymology
  • Crystallography, X-Ray / methods*
  • Protein Structure, Secondary
  • Proteins / chemistry*
  • Scattering, Radiation
  • Selenoproteins
  • X-Ray Diffraction

Substances

  • Proteins
  • Selenoproteins
  • Chromium
  • Chorismate Mutase