Identification of four novel HLA-DOA alleles, DOA*010106, DOA*0102, DOA*0103, and DOA*0104N, by sequence-based typing*

Tissue Antigens. 2005 Sep;66(3):242-5. doi: 10.1111/j.1399-0039.2005.00446.x.

Abstract

DOA sequences are currently known to have identical protein sequences. However, in this study, we report four novel allele types of human leucocyte antigen-DOA, including one synonymous and three non- synonymous amino acid changes from the Korean population. DOA*010106 has identical protein sequence with previously known DOA*010103 except one nucleotide difference at codon 45 (TCG-->TCA). In contrast, DOA*0102 and DOA*0103 have a sequence change at codon 99 (CTG-->GTG) and codon 105 (CGC-->TGC), causing non-synonymous amino acid changes, Leu99Val and Arg105Cys, respectively. In addition, DOA*0104N has a sequence deletion at codon 36 (CCC-->CC-), resulting in a frame shift leading to a stop codon at codon 62.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles*
  • Base Sequence
  • Codon
  • Codon, Terminator
  • DNA Primers / genetics
  • Frameshift Mutation
  • Genes, MHC Class II*
  • HLA-D Antigens / genetics*
  • Histocompatibility Testing
  • Humans
  • Korea
  • Molecular Sequence Data
  • Polymerase Chain Reaction
  • Sequence Analysis, DNA*
  • Sequence Homology, Nucleic Acid

Substances

  • Codon
  • Codon, Terminator
  • DNA Primers
  • HLA-D Antigens

Associated data

  • GENBANK/AY947479
  • GENBANK/AY947480
  • GENBANK/AY947481
  • GENBANK/AY947482