Bioconjugates for tunable peptide fragmentation: free radical initiated peptide sequencing (FRIPS)

J Am Chem Soc. 2005 Sep 14;127(36):12436-7. doi: 10.1021/ja052042z.

Abstract

The free radical initiator Vazo 68 is coupled to a peptide and electrosprayed into an ion trap mass spectrometer. On collisional activation, the Vazo 68-peptide conjugate generates a free radical, which can be collisionally activated to cleave the peptide backbone. Mostly z-type fragments are formed, as in CAD of other radical peptides and ECD fragmentation. We present data for the Angiotensin II-Vazo 68 conjugate and discuss possible sites of H atom abstraction from the peptide. This experimental methodology for generating peptide fragments is a useful step toward the development of a completely gas-phase approach to protein sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Angiotensin II / chemical synthesis*
  • Angiotensin II / chemistry
  • Azo Compounds / chemistry
  • Free Radicals / chemistry
  • Mass Spectrometry / methods
  • Molecular Structure
  • Nitriles / chemistry
  • Organic Chemicals / chemical synthesis*
  • Organic Chemicals / chemistry
  • Peptide Fragments / chemical synthesis*
  • Peptide Fragments / chemistry
  • Sequence Analysis, Protein / methods*

Substances

  • Azo Compounds
  • Free Radicals
  • Nitriles
  • Organic Chemicals
  • Peptide Fragments
  • Vazo 68
  • Angiotensin II