Searching for differentially expressed gene combinations

Genome Biol. 2005;6(10):R88. doi: 10.1186/gb-2005-6-10-r88. Epub 2005 Sep 19.

Abstract

We propose 'CorScor', a novel approach for identifying gene pairs with joint differential expression. This is defined as a situation with good phenotype discrimination in the bivariate, but not in the two marginal distributions. CorScor can be used to detect phenotype-related dependencies and interactions among genes. Our easily interpretable approach is scalable to current microarray dimensions and yields promising results on several cancer-gene-expression datasets.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Gene Expression Profiling / methods*
  • Genes, Neoplasm / genetics
  • Humans
  • Models, Genetic
  • Neoplasms / genetics
  • ROC Curve
  • Software