[Analysis of interactions of buried polar side chains in beta-proteins]

Mol Biol (Mosk). 2005 Sep-Oct;39(5):878-86.
[Article in Russian]

Abstract

It was shown in qualitative and quantitative analyses of polar side chains inaccessible for water molecules as well as their interactions in 100 globular beta-structural proteins that completely buried polar side chains are widespread in beta-proteins, their vast majority being involved in "side chain-side chain" or "side chain-main chain" interactions. The analysis of the occurrence of different "side chain-partner" pairs permitted us to demonstrate that such interactions are selective. The results were compared with similar data obtained previously for alpha-helical proteins.

Publication types

  • English Abstract

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / chemistry*
  • Hydrogen Bonding
  • Protein Folding
  • Protein Structure, Secondary*
  • Proteins / chemistry*

Substances

  • Amino Acids
  • Proteins