The structure and location of SIMP/STT3B account for its prominent imprint on the MHC I immunopeptidome

Int Immunol. 2005 Dec;17(12):1583-96. doi: 10.1093/intimm/dxh336. Epub 2005 Nov 1.

Abstract

Proteins show drastic discrepancies in their contribution to the collection of self-peptides that shape the repertoire of CD8 T cells (MHC I self-immunopeptidome). To decipher why selected proteins are the foremost sources of MHC I-associated self-peptides, we chose to study SIMP/STT3B because this protein generates very high amounts of MHC I-associated peptides in mice and humans. We show that the endoplasmic reticulum (ER)-associated degradation pathway and MHC I processing intersect at SIMP/STT3B. Relevant key features of SIMP/STT3B are its lysine-rich region, its propensity to misfold and its location in the ER membrane in close proximity to the immunoproteasome. Moreover, we show that coupling to SIMP/STT3B can be used to foster MHC I presentation of a selected peptide, here the ovalbumin peptide SIINFEKL. These data yield novel insights into relations between the cell proteome and the MHC I immunopeptidome. They suggest that the contribution of a given protein to the MHC I immunopeptidome results from the interplay of at least three factors: the presence of degrons (degradation signals), the tendency of the protein to misfold and its subcellular localization. Furthermore, they indicate that substrates of the ER-associated degradation pathway may have a prominent imprint on the MHC I self-immunopeptidome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antigen Presentation / genetics
  • Antigen Presentation / immunology*
  • Autoantigens / genetics
  • Autoantigens / immunology*
  • CD8-Positive T-Lymphocytes / immunology
  • CD8-Positive T-Lymphocytes / ultrastructure
  • COS Cells
  • Chlorocebus aethiops
  • Endoplasmic Reticulum / immunology*
  • Endoplasmic Reticulum / ultrastructure
  • Glycosyltransferases / genetics
  • Glycosyltransferases / immunology*
  • HeLa Cells
  • Hexosyltransferases
  • Histocompatibility Antigens Class I / genetics
  • Humans
  • Membrane Proteins
  • Mice
  • Protein Folding
  • Proteome / immunology*

Substances

  • Autoantigens
  • Histocompatibility Antigens Class I
  • Membrane Proteins
  • Proteome
  • Glycosyltransferases
  • Hexosyltransferases
  • STT3B protein, human