PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization

U Dogrusoz; E Z Erson; E Giral; E Demir; O Babur; A Cetintas; R Colak

doi:10.1093/bioinformatics/bti776

PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization

Bioinformatics. 2006 Feb 1;22(3):374-5. doi: 10.1093/bioinformatics/bti776. Epub 2005 Nov 15.

Authors

U Dogrusoz¹, E Z Erson, E Giral, E Demir, O Babur, A Cetintas, R Colak

Affiliation

¹ Bilkent Center for Bioinformatics (BCBI), Bilkent University, Ankara 06800, Turkey. [email protected]

PMID: 16287939
DOI: 10.1093/bioinformatics/bti776

Abstract

Patikaweb provides a Web interface for retrieving and analyzing biological pathways in the Patika database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computer Graphics*
Computer Simulation
Database Management Systems
Databases, Factual
Gene Expression Regulation / physiology*
Information Storage and Retrieval / methods
Internet
Models, Biological*
Online Systems
Protein Interaction Mapping / methods*
Proteome / metabolism*
Signal Transduction / physiology*
Software
User-Computer Interface*

Substances

Proteome