Yangia pacifica gen. nov., sp. nov., a novel member of the Roseobacter clade from coastal sediment of the East China Sea

Int J Syst Evol Microbiol. 2006 Mar;56(Pt 3):529-533. doi: 10.1099/ijs.0.64013-0.

Abstract

An aerobic, Gram-negative bacterial isolate, strain DX5-10T, was isolated from coastal sediment of the East China Sea. The taxonomy of strain DX5-10T was studied by phenotypic and phylogenetic methods. Strain DX5-10T was motile, formed faint-yellowish colonies and was positive for catalase reaction and weakly positive for oxidase reaction. The nearly complete 16S rRNA gene of strain DX5-10T was obtained and sequence analysis indicated that strain DX5-10T represented an independent lineage within the Roseobacter clade of Alphaproteobacteria. Strain DX5-10T was phylogenetically related to members of the genera Roseobacter, Loktanella, Roseisalinus, Silicibacter, Antarctobacter, Sulfitobacter, Salipiger, Ruegeria and Roseivivax, and the sequence identities among them were less than 95.0%. The predominant respiratory ubiquinone of strain DX5-10T was Q-10 and the DNA G + C content of strain DX5-10T was 63.3 mol%. Therefore, strain DX5-10T represents a novel species of a novel genus, for which the name Yangia pacifica gen. nov., sp. nov. is proposed, with the type strain DX5-10T (= CGMCC 1.3455T = JCM 12573T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriochlorophyll A / analysis
  • DNA, Ribosomal / chemistry
  • Geologic Sediments / microbiology*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Roseobacter / classification*
  • Roseobacter / genetics
  • Roseobacter / isolation & purification
  • Roseobacter / physiology

Substances

  • Bacteriochlorophyll A
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S